((full)) — Mstoolkit

Raw MS files (mzML) ↓ Import into MSToolkit ↓ Baseline correction + denoising ↓ Peak detection → peak list ↓ RT alignment across samples ↓ Feature matching → matrix (samples × features) ↓ Normalization + missing value imputation ↓ Statistical analysis (PCA, t-test, etc.) ↓ Visualization + export (CSV, figures)